PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G184800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 264aa    MW: 29342.1 Da    PI: 8.0584
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G184800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-19118172256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q  +Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Manes.05G184800.1.p 118 RKKLRLSKQQSAILEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTK 172
                          788899***********************************************98 PP
2HD-ZIP_I/II124.64.4e-40118207191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L++++++l+een+rL+ke +eLr +
  Manes.05G184800.1.p 118 RKKLRLSKQQSAILEDSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLRKCCETLTEENKRLQKELQELR-S 206
                          69*************************************************************************************9.4 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Manes.05G184800.1.p 207 L 207
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.248114174IPR001356Homeobox domain
SuperFamilySSF466898.98E-19116183IPR009057Homeodomain-like
SMARTSM003898.6E-17116178IPR001356Homeobox domain
CDDcd000865.41E-17117175No hitNo description
Gene3DG3DSA:1.10.10.602.9E-18118172IPR009057Homeodomain-like
PfamPF000469.6E-17118172IPR001356Homeobox domain
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
SMARTSM003401.5E-21174217IPR003106Leucine zipper, homeobox-associated
PfamPF021832.7E-10174207IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGFGISDDVC NTGLGLGLSS HDNQQNYSQS VHLKQKKKLF LKYDHTFPSL TLGPPPQEPY  60
PSATMVEADL QPQASSPSAV SSFSNSSIKK EREFRGEEVE VERVSSRVSD EDEEGSPRKK  120
LRLSKQQSAI LEDSFKEHST LNPKQKQALA EQLNLRPRQV EVWFQNRRAR TKLKQTEVDC  180
EVLRKCCETL TEENKRLQKE LQELRSLKMA APLYMQLPAA TLTVCPSCER IGSGGGDATS  240
TSTLTVGPKP HFYSPFTHPS AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G184800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614075.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466047e-86HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2C9VXJ50.0A0A2C9VXJ5_MANES; Uncharacterized protein
STRINGcassava4.1_026976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-74HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]