PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G176800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 371aa    MW: 40610.8 Da    PI: 10.4649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G176800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.9e-32297355259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp+kk+ver+ +dp +++itYeg+Hnh+
  Manes.05G176800.1.p 297 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPAKKHVERALDDPMMLIITYEGNHNHS 355
                          69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-18249294IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.5E-33285355IPR003657WRKY domain
PROSITE profilePS5081129.93291357IPR003657WRKY domain
SuperFamilySSF1182901.7E-26294355IPR003657WRKY domain
SMARTSM007749.0E-39296356IPR003657WRKY domain
PfamPF031066.0E-27298354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAVELMMGFS GDSFTTKMQE TAVREAATAG IQNVEEVIKL LKRNQLQQQQ QYYPELSSSS  60
AVNNPPATDN IMAVTDAAVN SFKKVISLLG RTTRTGHARF RRAPVSPASA TQERPKQPQP  120
QPQQQQQQVQ DPGPTVRPIS SQTTEQGSAF RVYQPTPVHR LPPLPNTHGH QQQKTPLLVT  180
KNGFSERNEI QPSINFSNSP SISAATSFIS SLTGETDSVQ RSMSSGFQFA QPSHVSSAGK  240
PPLSSASLKR KCNSMDDAAL KCGSSSGRCH CSKKRKSRVK RVIRVPAISN KLADIPSDEY  300
SWRKYGQKPI KGSPHPRGYY KCSSMRGCPA KKHVERALDD PMMLIITYEG NHNHSNSIND  360
APAVRVLESS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22284354271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G176800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275760.0KT827576.1 Manihot esculenta WRKY transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614182.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-117WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A140H8K50.0A0A140H8K5_MANES; WRKY transcription factor 1
STRINGcassava4.1_010007m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-91WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]