PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G168600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 350aa    MW: 38903.6 Da    PI: 7.84
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G168600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.11.1e-29144198255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 
                          pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ +YR+
  Manes.05G168600.1.p 144 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQvMYRT 198
                          9*************************************************88997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-14141199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-26142199IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-21144196IPR006447Myb domain, plants
PfamPF002493.8E-6145194IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MFSSSNQIMR TSSPLPDLSL QISPPSVCDF EAIKKVDYDG GLTRKAFYSD RSSTTDSGSS  60
GSDLSHENGF FNQEMGYNLG PSEPTLSLGF EMADLSSPTL QLPRNLNHHH HHHQHHHHQP  120
QIYGREFKRN VRMISGVKRS IRAPRMRWTT TLHAHFVHAV QLLGGHERAT PKSVLELMNV  180
KDLTLAHVKS HLQVMYRTVK STDKGSGQGQ TDMGLKQTAG LIVDLDAGFS AGKVETNPCC  240
SHNPPPTPPL PTIQKTQIRG SGSWSSSMET RDKNRSNTED STYSHFSAHD AKEDRPMAAL  300
HMSERVKERL ESSSLSPSDM LVNLEFTLGR PSWQMDYAES SNELTLLKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-15145200458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-15145200458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-15145200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-15145200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-15145200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-15145200357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-15145200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-15145200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-15145200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-15145200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-15145200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-15145200458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G168600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719892e-90KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612466.10.0probable transcription factor KAN4
TrEMBLA0A2C9VX360.0A0A2C9VX36_MANES; Uncharacterized protein
STRINGcassava4.1_010921m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-68G2-like family protein