PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G163200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 395aa    MW: 43357.2 Da    PI: 4.7236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G163200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.74.2e-14121166128
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                           F+  dee+   +L+k + g +l+  +vi++v+ y++ P++Lp      +  wy  +++++          a++ g Wk +g+  +++s 
  Manes.05G163200.1.p  12 DFDCADEEIF-IFLEKMAGGYPLPG-NVITDVNPYNYPPSNLP------DGIWYLIHSKEN---------GAMEFGCWKVKGEACKLFS- 83 
                          69999***98.9************9.99**************9......346888877644.........46789**************. PP

                  NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++  +g ++tL f++ + ++  ktdWvm+ey +
  Manes.05G163200.1.p  84 NSDITGWRTTLEFFERQVHHECKTDWVMQEYWI 116
                          9999**********9999999**********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.9837139IPR003441NAC domain
PfamPF023652.7E-89114IPR003441NAC domain
SuperFamilySSF1019413.79E-2213138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MRPSIASLPE IDFDCADEEI FIFLEKMAGG YPLPGNVITD VNPYNYPPSN LPDGIWYLIH  60
SKENGAMEFG CWKVKGEACK LFSNSDITGW RTTLEFFERQ VHHECKTDWV MQEYWITQKG  120
PGENSKLKEA SSLCRVFLGG EQGLDHKKQQ KVSSLHNACE NLVHSTKATV PKARDDASNG  180
STSKPEVDGD AETGNLAVAG EPPFYLVGNP PEIDYISRGD FLELLDLDNP ASPSSSSDDS  240
SCLTSSSDEC FDSLALLQEL DSEINWHSAQ KNESCKFSVS ASFRPNEVVM APISPGTSFS  300
IEESKPPTEE LVGTNPSVLP TLANDSNDLD NRVLQHTVRN HNADNTAGGP SNSSDVGTSS  360
SCQLPSRDGK RKVSKLRTKK HKKYLCFIPF SFLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G163200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051500.0KR605150.1 Manihot esculenta NAC transcription factors 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613477.10.0NAC domain-containing protein 89-like
TrEMBLA0A0M4FLN50.0A0A0M4FLN5_MANES; NAC transcription factors 12
STRINGcassava4.1_009209m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-15NAC domain containing protein 28
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]