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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Manes.05G153200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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| Family |
SRS |
| Protein Properties |
Length: 303aa MW: 33398.8 Da PI: 6.4974 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.05G153200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 230.7 | 2.5e-71 | 89 | 239 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsst 89
g+++CqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpa+krrerqqql+++++++++++ + +++kr+re+ + + +l++t
Manes.05G153200.1.p 89 GGMNCQDCGNQAKKDCVHMRCRTCCKSRGFPCQTHVKSTWVPASKRRERQQQLSSLQEQQQQQQqqqfRGENPKRQREN-QGDAPSLACT 177
789****************************************************998888777444444455555544.4445555666 PP
DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+l a++++ le++++P+ev+s+avfrcvrvs +d+ +e++aYqtav+igGhvfkGiLydqG++
Manes.05G153200.1.p 178 RL--ATTTTGLEIEHFPPEVNSPAVFRCVRVSPMDEPDEQYAYQTAVNIGGHVFKGILYDQGPD 239
65..555677999*************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MAGWFYLSGR EGASSKVQEE NKDPENNFFL YRSNEEIDNK GFEIWQQDYQ QQQNMNSYSS 60
YGVGLSRISL SDESSRSGFM VMRQSGVGGG MNCQDCGNQA KKDCVHMRCR TCCKSRGFPC 120
QTHVKSTWVP ASKRRERQQQ LSSLQEQQQQ QQQQQFRGEN PKRQRENQGD APSLACTRLA 180
TTTTGLEIEH FPPEVNSPAV FRCVRVSPMD EPDEQYAYQT AVNIGGHVFK GILYDQGPDG 240
RYTSGGESSS GGGQQLNFMT AATTSAAATT TNANNPGAGA LLDPSLYPAP FNAFIAVLTC 300
NQ*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP011966 | 1e-124 | AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence. |
