PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G151500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family BBR-BPC
Protein Properties Length: 346aa    MW: 38483.3 Da    PI: 9.9376
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G151500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind393.53.1e-12013451301
            GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                          mdd g+re  r+k+ +y+        +    ++   +q+m+++aerda+i+ern+a+sekkaa+aerdmaflqrd+a+aern+a++erdn
  Manes.05G151500.1.p   1 MDDGGHREngRHKAdQYKtaqsqwlmQ----AQPSMKQIMAIMAERDAAIHERNMAISEKKAAIAERDMAFLQRDSAIAERNNAIMERDN 86 
                          9*****999*****9**9554333321....1223459**************************************************** PP

            GAGA_bind  80 kllalllvensla....salpvgvqvlsgtksidslqqlse..........pqledsavelreeeklealpieeaaeeakekkkkkkrqr 155
                          ++++l+++ensl+    s++p+g+q+ +g+k++++ qq+ +          p+ +++++++re++ +++lp++   +ea +   +++++r
  Manes.05G151500.1.p  87 AIATLQYRENSLTsgnmSSCPPGCQIARGVKHMHHPQQHAHnvphssahnvPHSSEPSYGTREMQANDTLPMSPVGSEAAK---SRRGKR 173
                          ***********9999999********************8888999999888888999999999999999997654433333...332333 PP

            GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCt 216
                          +k++k+++   ++kk++ks +kvk+e++d +                             sk+++k +dl+ln++++Dest+P+PvCsCt
  Manes.05G151500.1.p 174 SKDTKVTT---PNKKTSKSPRKVKRENEDLNkrtfdkphewkneqdmtgggddlnkqlvaSKSDWKGQDLGLNQIAFDESTMPAPVCSCT 260
                          33333333...333333344444444444222456666789999********************************************** PP

            GAGA_bind 217 GalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          G+ rqCYkWGnGGWqS+CCtt+iS+yPLP+++++r+aR++grKmS++af+klL++LaaeGydlsnpvDLk+hWAkHGtn+++ti+
  Manes.05G151500.1.p 261 GVFRQCYKWGNGGWQSSCCTTSISMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGYDLSNPVDLKEHWAKHGTNRYITIK 345
                          ************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.4E-1051345IPR010409GAGA-binding transcriptional activator
SMARTSM012266.3E-1851345IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDDGGHRENG RHKADQYKTA QSQWLMQAQP SMKQIMAIMA ERDAAIHERN MAISEKKAAI  60
AERDMAFLQR DSAIAERNNA IMERDNAIAT LQYRENSLTS GNMSSCPPGC QIARGVKHMH  120
HPQQHAHNVP HSSAHNVPHS SEPSYGTREM QANDTLPMSP VGSEAAKSRR GKRSKDTKVT  180
TPNKKTSKSP RKVKRENEDL NKRTFDKPHE WKNEQDMTGG GDDLNKQLVA SKSDWKGQDL  240
GLNQIAFDES TMPAPVCSCT GVFRQCYKWG NGGWQSSCCT TSISMYPLPA VPNKRHARVG  300
GRKMSGSAFS KLLSRLAAEG YDLSNPVDLK EHWAKHGTNR YITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G151500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613374.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613375.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613376.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613377.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613378.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021613379.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-159BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2C9VYP50.0A0A2C9VYP5_MANES; Uncharacterized protein
STRINGcassava4.1_029314m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-162basic pentacysteine 6