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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G126800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 391aa MW: 43856.8 Da PI: 6.2745 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.5e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ Manes.05G126800.1.p 21 LPPGFRFHPTDEELITFYLASKVFNGSFCG-VEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDR 109 79*************************877.45***************8888899*********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl Manes.05G126800.1.p 110 EVYSAsTGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 ***9878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-63 | 16 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.909 | 21 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MLAVEELLFE LTGEDRNDQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VEIAEVDLNR 60 CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASTGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHACKE EWVICRIFHK TVEKKNGLVH 180 GQGFLLEAAS PPISSSLPSL LEAPSSMLEC LAQAPTEALQ NPFLIHHRES DLKSLLVSQP 240 HVLSGNGLFQ PSFTPAPITI NTRETNKSID TNTNNNPSPS MLVKSLLSHQ DCTLKEHSTI 300 PKQCKTEPHF SHFQLPDANL NWEDKMHPSP YQYPLSFEMD CSALGILAAA ADSGITTHET 360 STSIVFNRAG FQMMLDTPIR LPAESWPLDT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-50 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G126800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605205 | 0.0 | KR605205.1 Manihot esculenta NAC transcription factors 67 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614213.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 1e-107 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A0M3R862 | 0.0 | A0A0M3R862_MANES; NAC transcription factors 67 | ||||
STRING | cassava4.1_027291m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7888 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-107 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G126800.1.p |