 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Manes.05G111900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 243aa MW: 28349.4 Da PI: 8.4548 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.05G111900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 97 | 8.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
kri+nk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
Manes.05G111900.1.p 9 KRIDNKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSQKGKLFEYST 59
79***********************************************96 PP
|
| 2 | K-box | 110.7 | 1.6e-36 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
++++ s++ + +e+++ e+++Lk+++e Lqr++Rh++Ged+esLslkeLq+LeqqL+++lk+iR++Kn+l++e+i+elqkkek++qe+n
Manes.05G111900.1.p 76 AERQIISTDLNSQENWTLEYNRLKAKVELLQRNHRHYMGEDIESLSLKELQNLEQQLDTALKHIRARKNQLMYESISELQKKEKAIQEQN 165
5566677777889***************************************************************************** PP
K-box 92 kaLrkklee 100
+L+k+++e
Manes.05G111900.1.p 166 SMLTKQIKE 174
******987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 32.015 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 5.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.27E-34 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 9.37E-41 | 2 | 79 | No hit | No description |
| PRINTS | PR00404 | 1.4E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.0E-30 | 86 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 17.82 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009933 | Biological Process | meristem structural organization |
| GO:0010076 | Biological Process | maintenance of floral meristem identity |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MGRGRVQLKR IDNKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSQ KGKLFEYSTD 60
SCMEKILERY ERYSYAERQI ISTDLNSQEN WTLEYNRLKA KVELLQRNHR HYMGEDIESL 120
SLKELQNLEQ QLDTALKHIR ARKNQLMYES ISELQKKEKA IQEQNSMLTK QIKEKEKAVA 180
QQALWEQHNH GTNMSPFLLP QPPLPCLNIG VNYQEEAPEV RRNELDLTLE PLYSCHLGCF 240
TS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
