PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

M-type_MADS

Protein Properties

Length: 367aa MW: 41285.6 Da PI: 8.4478

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G103700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62	6.9e-20	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en rq t+ kR++gi+KKA+ELS+LCd+++ +++fs+tgk Manes.05G103700.3.p 10 KLENINGRQATYGKRKHGIMKKAKELSILCDIDIILLMFSPTGK 53 5688899***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-26	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.114	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.08E-23	2	81	No hit	No description
SuperFamily	SSF55455	9.55E-24	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-15	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-17	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-15	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-15	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGRVKLKIKK LENINGRQAT YGKRKHGIMK KAKELSILCD IDIILLMFSP TGKPSICKGK 60 RSIEEVIAKF AQLTPQERAK RKLEGLEALK KTFKKLDHDV NIPEFLGSSS QTIEDLSNQS 120 RLLQNQLSEV HKRLSYWSNP NKINNIEHLG QLENSLRESL NQLRAHKDYL GKQQFMSLEC 180 NNQFQNGMHV PFRIGTDQQL PPMPWIPNND SQQIVLPEDP NLLPHRDVEC SASSSFGSYS 240 GYFGTGKSSE ISNSSQENGV NGLFNELNGT ASLRLQLAGQ YPYLPNNLNL LNDAKFQPAS 300 EMNIQESPVD FHVNGSFEAP KPGYDTNPGS WASSSGPCAV TMFDERFYSR KDHLYGSNNE 360 EFFRIS*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGRVKLKIKK LENINGRQAT YGKRKHGIMK KAKELSILCD IDIILLMFSP TGKPSICKGK  60
RSIEEVIAKF AQLTPQERAK RKLEGLEALK KTFKKLDHDV NIPEFLGSSS QTIEDLSNQS  120
RLLQNQLSEV HKRLSYWSNP NKINNIEHLG QLENSLRESL NQLRAHKDYL GKQQFMSLEC  180
NNQFQNGMHV PFRIGTDQQL PPMPWIPNND SQQIVLPEDP NLLPHRDVEC SASSSFGSYS  240
GYFGTGKSSE ISNSSQENGV NGLFNELNGT ASLRLQLAGQ YPYLPNNLNL LNDAKFQPAS  300
EMNIQESPVD FHVNGSFEAP KPGYDTNPGS WASSSGPCAV TMFDERFYSR KDHLYGSNNE  360
EFFRIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G103700.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021613965.1	0.0	agamous-like MADS-box protein AGL30 isoform X1
Refseq	XP_021613966.1	0.0	agamous-like MADS-box protein AGL30 isoform X2
Refseq	XP_021613967.1	0.0	agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	1e-118	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2C9VX70	0.0	A0A2C9VX70_MANES; Uncharacterized protein
TrEMBL	A0A2C9VXG7	0.0	A0A2C9VXG7_MANES; Uncharacterized protein
STRING	cassava4.1_025309m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	8e-82	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Manes.05G103700.3.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]