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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G093800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 201aa MW: 22099.9 Da PI: 7.7633 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.5e-12 | 34 | 78 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++lG+g+W+ I+r + +Rt+ q+ + qky Manes.05G093800.1.p 34 PWTEDEHRLFLLGLQKLGKGDWRGISRNFVITRTPTQVATHAQKY 78 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.101 | 27 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-16 | 28 | 84 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-16 | 31 | 81 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-7 | 31 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 33 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-9 | 34 | 78 | No hit | No description |
Pfam | PF00249 | 1.6E-10 | 34 | 78 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDQILNRGGV AAGYESDNVV HGSGSSCERK GGVPWTEDEH RLFLLGLQKL GKGDWRGISR 60 NFVITRTPTQ VATHAQKYYL HRNNRYRYRR GSSLFDITAD SSLGSLIEEE QVHQETATLP 120 TFPESLSPAF LTVADVNTME NLSLGSSSSN LKISPKLIRP VPIIPVPLSS KMADLNLNEK 180 NPTKEHLPLS LKLSTPSSEE * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G093800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612875.1 | 1e-147 | transcription factor MYB1R1-like | ||||
TrEMBL | A0A2C9VUS5 | 1e-145 | A0A2C9VUS5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033048m | 1e-140 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5338 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 3e-33 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G093800.1.p |