PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Basic Information? help Back to Top

TF ID

Manes.05G073200.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 296aa MW: 33407.2 Da PI: 7.2076

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G073200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	16	40	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 ykC C k ++ k++L+ H++ H Manes.05G073200.2.p 16 YKCYACYKQYKKKEHLVEHMKIsyH 40 9*******************97666 PP
2	zf-C2H2	11.8	0.00076	82	102	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C C ++F ++s+L++H ++ Manes.05G073200.2.p 82 CDLCLEVFDSPSSLNKHREMC 102 999**************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	12.113	16	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	18	40	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.420.10	3.4E-10	136	185	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	8.63E-10	140	237	IPR012337	Ribonuclease H-like domain
Gene3D	G3DSA:3.30.420.10	1.8E-11	186	242	IPR012337	Ribonuclease H-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDSDSYPPTK ALTTRYKCYA CYKQYKKKEH LVEHMKISYH SAHQPRCAVC QKHCKSFESL 60 REHLTGPLAK TNCLGIFSDR GCDLCLEVFD SPSSLNKHRE MCCLSAPASL ATEIPTCTES 120 QIYVSGSIDE SYACKGGEAV AIDCEMVGGG SDGSLDLCAR VCLLDEDENI IFHSYVQPQI 180 PVTNYRDTAK YRPLMKTNLV SHSLKYLVQT YLGYNIQTGV HDPYEDCVSV MRLYKRMRAQ 240 NHHVEGSGIQ SICGGFDFWK PKELEKMTPE KLYEISRSNY RCWCLDLKGQ QPGLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G073200.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612186.1	0.0	uncharacterized protein LOC110614820 isoform X3
TrEMBL	A0A2C9VWA9	0.0	A0A2C9VWA9_MANES; Uncharacterized protein
STRING	cassava4.1_022155m	1e-179	(Manihot esculenta)

Link Out ? help Back to Top
Phytozome	Manes.05G073200.2.p