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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G054300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24887.6 Da PI: 4.7226 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 116 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr+++ +g+++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ k++g Manes.05G054300.1.p 116 QYKGVRRRP-WGKYAAEIRDPKKNG--ARIWLGTYETPEDAAVAYDRAAFKMRG 166 59*******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.775 | 116 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-32 | 116 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-23 | 116 | 175 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-39 | 116 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-32 | 116 | 176 | No hit | No description |
PRINTS | PR00367 | 3.7E-13 | 117 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 117 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-13 | 156 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MWGENTSLPA LLDSIQQYLL EDDFETLTTL PQLNFSDDSI FATPLSDDVS FSVQDLLDIT 60 SYSHEVNGEW SPVCHFDSTL VETTMPVVEL QSQQSVVSPE EVTLTSNRNA TSKGWQYKGV 120 RRRPWGKYAA EIRDPKKNGA RIWLGTYETP EDAAVAYDRA AFKMRGSKAK LNFPHLIGSS 180 DYEPVRVTNK RCSPECSSSS SSSSLLSWES DDCSPAQKRR TK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-33 | 112 | 181 | 1 | 70 | ATERF1 |
3gcc_A | 7e-33 | 112 | 181 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G054300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611585.1 | 1e-128 | ethylene-responsive transcription factor 13-like | ||||
Swissprot | Q8L9K1 | 2e-48 | ERF99_ARATH; Ethylene-responsive transcription factor 13 | ||||
TrEMBL | A0A2C9VTH3 | 1e-164 | A0A2C9VTH3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030919m | 1e-164 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 7e-47 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G054300.1.p |
Publications ? help Back to Top | |||
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