PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G049900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 438aa    MW: 47729.9 Da    PI: 7.4344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G049900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.1e-15272317555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RR++iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Manes.05G049900.1.p 272 HNQSERKRREKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 317
                          9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.847267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-20270343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.31E-17272321No hitNo description
Gene3DG3DSA:4.10.280.108.1E-18272325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12272317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-18273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSQCVPSWDL HDNPSLAKQS LRSHSNSIAP DVLMLDYEVA ELTWENGQLA MHGLGPPRLL  60
AKPMASTSPS KCTWDKPRAN GTLESIVNQA TRLPKRKPGL ENCGCGSQEL VPWFEHNPAR  120
TAASPTMTMD ATVPCSNRPE DRSTHVMDSV PGSSNCVVGT STDVGSCSGR AATQDEEATV  180
HVKRPRVARV SVVPEWSSRQ SVSGSENFGR DSQQENTSCG RPVTKTATED ENDSVYHSGP  240
FQRDAGDEEE DAKKGNGKSS VSTKRSRAAA IHNQSERKRR EKINQRMKTL QKLVPNSSKT  300
DKASMLDEVI EYLKQLQSQV QMMSRMPLML PMAMQQQLQM SMLSPMNMGM GVMDMNSIAC  360
LNLAGISPVL HPSAFMPMAS WDASADRLQS ACTTAMPDAL SAFLACQSQP MTMDAYSRMA  420
AIYQQLQQQP PASSSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280ERKRRE
2276281RKRREK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G049900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611917.10.0transcription factor UNE10-like isoform X1
SwissprotQ8GZ381e-103UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A2C9VTC10.0A0A2C9VTC1_MANES; Uncharacterized protein
STRINGcassava4.1_027046m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]