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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G040000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 33130.7 Da PI: 8.8822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 29 | 79 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Manes.05G040000.1.p 29 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 79 589******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.33E-32 | 29 | 86 | No hit | No description |
SMART | SM00380 | 5.4E-37 | 29 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-15 | 29 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-28 | 29 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.534 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-7 | 30 | 41 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-20 | 30 | 86 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-7 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAEVEKLKNS SAATTKTTNM EQPNKAVRRF VGVRQRPSGR WVAEIKDSSQ RVRLWLGTYD 60 TPEEAARAYD EAARALRGEN ARTNFALVNN NNNNPHYSNT AQSGLSPTNG GLVSESDGRH 120 SLSFSSLKAK LSKNLQSIMA RTTESKSTKN RVSDHFTFAR IFHFRSQQYQ KPVDIKNIEK 180 VVQPSIIVPR VANEHEQSSW ETSSVSDCSN EWIGFRQQGL DSDGSDIGEV SIGDQGLKDQ 240 MMVSGCSGEG SRSKRFKVSS TVMVPPTFSH GSPSFCGSPN FCGSPCFCGS PSFCGSPFHG 300 EN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 29 | 85 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G040000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611474.1 | 0.0 | uncharacterized protein LOC110614280 | ||||
TrEMBL | A0A2C9VT61 | 0.0 | A0A2C9VT61_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028498m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-16 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G040000.1.p |