PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G037100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 290aa    MW: 31847.7 Da    PI: 6.885
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G037100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-154994148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Manes.05G037100.2.p 49 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 94
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.1932043IPR017877Myb-like domain
SuperFamilySSF466891.45E-2130101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-113055IPR009057Homeodomain-like
PROSITE profilePS5129424.5394498IPR017930Myb domain
SMARTSM007173.0E-144896IPR001005SANT/Myb domain
PfamPF002493.5E-144994IPR001005SANT/Myb domain
CDDcd001674.65E-115194No hitNo description
Gene3DG3DSA:1.10.10.603.9E-215695IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRFLSVTSRR MDMAVGALSL SSQVLTGLLR CGKSCRLRWT NYLRPDIKRG PFTLEEEKLV  60
IQLHGILGNR WAAIASQLPG RTDNEIKNLW NTHLKKRLLC MGLDPQTHEP FTSCGPAIKA  120
PASPATRHMA QWESARLEAE ARLSRESSLF NPPTPGKSDN DYFLRIWNSE VGDSFRKFNQ  180
ADKTTRKSPA SASQASSSTK CGSVSAVTAD ISPNLAGCST TARNQNEDTE CKSCKSYAED  240
LNAGSDSSSS LELEDSSDST LQLLLDFPIN NDMSFLEENM DGYATYSAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21199831108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G037100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613854.10.0transcription factor MYB41-like isoform X1
SwissprotQ9M2D91e-102MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A251L8930.0A0A251L893_MANES; Uncharacterized protein
STRINGcassava4.1_030831m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-91myb domain protein 17