PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G030900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 353aa    MW: 39731.2 Da    PI: 4.7065
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G030900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.39e-30127187158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          +dDgynWrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs++dp+++e+tY+g+H++
  Manes.05G030900.1.p 127 VDDGYNWRKYGQKDILGANFPRGYYRCTHRhsqGCLATKQVQRSDQDPTIFEVTYRGRHTC 187
                          59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-29118188IPR003657WRKY domain
PROSITE profilePS5081123.41122185IPR003657WRKY domain
SuperFamilySSF1182907.72E-26126188IPR003657WRKY domain
SMARTSM007743.6E-41127189IPR003657WRKY domain
PfamPF031062.2E-27128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEKAMDCEQK ILISELNQGK ELAERLRKHL NSISSPESRQ FLVEQILSSY EKALSMLNWG  60
APAVEITPTI TTLESPCYYA NCSPGSDVSD QDCKDQCHKN IYKKRKTEPR WTEQVKVISG  120
TGLEGPVDDG YNWRKYGQKD ILGANFPRGY YRCTHRHSQG CLATKQVQRS DQDPTIFEVT  180
YRGRHTCFQT SRFAIASTSL INAKSKLDKE GCQLEEQEQK SKLLKELSFN FTEELKSQEW  240
NTEDDIFHLF SFPETTIGSG DEENDIFKES MLENNILGSL STAFISPATS DSSYLAMSPC  300
HMNNLGIDHN VRTPESNSAS TSGTNSPIGD WDLLDNVDFD TNFPLDNPEL LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-191271851474Disease resistance protein RRS1
5w3x_D4e-191271851474Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G030900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275900.0KT827590.1 Manihot esculenta WRKY transcription factor 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614386.10.0probable WRKY transcription factor 53
TrEMBLA0A140H8L90.0A0A140H8L9_MANES; WRKY transcription factor 15
STRINGcassava4.1_010768m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-48WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]