PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 363aa MW: 39584.5 Da PI: 9.5451

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G030200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.8e-13	82	126	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Manes.05G030200.1.p 82 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 126 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-16	76	132	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.408	77	131	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-6	80	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-18	80	129	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-11	81	129	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-11	82	126	IPR001005	SANT/Myb domain
CDD	cd00167	2.48E-8	84	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MVSVNPNPVQ GFYFFDPMGM GLPGLNSLPP QTTSTTATTA TTTNTTAVNT SASTTSSAAN 60 TLAFADDPSK KIRKPYTITK SRESWTEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR 120 SHAQKYFLKV QKNGTSEHVP PPRPKRKAAH PYPQKAAKNA LAVSQVAGPF QSSSASLEPG 180 YVHRQDSSSV LGNPMTGGTL TTWNFNPVAP VNVSQVTKDD VGLAGPPTAH NCCYSSSNES 240 TPRTWQTSEI IDRGDQGKPM RVMPDFALVY SFIGSVFDPN ASGQLQRLKQ MDPINLETAL 300 LLMRNLAINL TSPDFEDHRR LLASYDVNTD NAKSGGPYSN IVADKTRYPF SSKRSETLKS 360 AC*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MVSVNPNPVQ GFYFFDPMGM GLPGLNSLPP QTTSTTATTA TTTNTTAVNT SASTTSSAAN  60
TLAFADDPSK KIRKPYTITK SRESWTEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR  120
SHAQKYFLKV QKNGTSEHVP PPRPKRKAAH PYPQKAAKNA LAVSQVAGPF QSSSASLEPG  180
YVHRQDSSSV LGNPMTGGTL TTWNFNPVAP VNVSQVTKDD VGLAGPPTAH NCCYSSSNES  240
TPRTWQTSEI IDRGDQGKPM RVMPDFALVY SFIGSVFDPN ASGQLQRLKQ MDPINLETAL  300
LLMRNLAINL TSPDFEDHRR LLASYDVNTD NAKSGGPYSN IVADKTRYPF SSKRSETLKS  360
AC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G030200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU947769	6e-91	KU947769.1 Toxicodendron vernicifluum microsatellite c26331 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021613697.1	0.0	protein REVEILLE 6-like
Swissprot	Q8H0W3	1e-111	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A2C9VSV3	0.0	A0A2C9VSV3_MANES; Uncharacterized protein
STRING	cassava4.1_010350m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1119	33	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.2	8e-96	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Manes.05G030200.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]