PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G026200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 305aa    MW: 35102.1 Da    PI: 5.0787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G026200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19105155155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +gr++AeIrd +     r +r++lg+f+taeeAa  +++a+ k++g
  Manes.05G026200.1.p 105 KKYRGVRQRP-WGRFAAEIRDpF-----RrTRVWLGTFDTAEEAAMVYDRAAIKIKG 155
                          59********.**********66.....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-33105162No hitNo description
PfamPF008479.7E-13106155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29106163IPR001471AP2/ERF domain
PROSITE profilePS5103222.695106163IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-21106162IPR016177DNA-binding domain
SMARTSM003802.2E-35106169IPR001471AP2/ERF domain
PRINTSPR003671.2E-10107118IPR001471AP2/ERF domain
PRINTSPR003671.2E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKTSSVKYTE HKKVTNKLVK CNDSNSTRVV RIYVTDGDAT DSSSDENDNF ISTHQRVKKH  60
INEIRIEDCV EYATGRASSD NSKSRFNKQM LRKNTRDQRY YPEGKKYRGV RQRPWGRFAA  120
EIRDPFRRTR VWLGTFDTAE EAAMVYDRAA IKIKGSNALT NFIKPPVRTS PPDFDIAASS  180
GYDSGMESHS LSSPTSVLRF QFTEEVGNEP QVLNGNVSRP VGEMKEKKWD WRLDQGIEEK  240
EWRPIQCVRE EDPTDNCFEE LVDIENYAPI LLDEYIIPDT VLTKDFVDVD GDFGSCLWDL  300
DEYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-24103170267ATERF1
3gcc_A5e-24103170267ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G026200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612442.10.0ethylene-responsive transcription factor CRF6-like
TrEMBLA0A2C9VST00.0A0A2C9VST0_MANES; Uncharacterized protein
STRINGcassava4.1_023883m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-49cytokinin response factor 4