PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 240aa MW: 27463.7 Da PI: 4.8062

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G018700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.3e-19	33	85	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le++Fe+++ + a+++ +LA++lgL+ rqV +WFqN+Ra++k Manes.05G018700.1.p 33 KRRFSDEQIKSLESMFESESRLEARKKLQLANELGLQPRQVAIWFQNKRARWK 85 578*************************************************9 PP
2	HD-ZIP_I/II	120.5	8.9e-39	32	123	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +krr+s+eq+k+LE++Fe+e++Le ++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L+ +l Manes.05G018700.1.p 32 NKRRFSDEQIKSLESMFESESRLEARKKLQLANELGLQPRQVAIWFQNKRARWKSKQLERDYSILRSNYNSLSTRFESLKKEKQALAVQL 121 69*************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Manes.05G018700.1.p 122 QK 123 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.68E-19	11	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.848	27	87	IPR001356	Homeobox domain
SMART	SM00389	2.8E-16	30	91	IPR001356	Homeobox domain
Pfam	PF00046	5.2E-17	33	85	IPR001356	Homeobox domain
CDD	cd00086	1.18E-14	33	88	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-19	34	94	IPR009057	Homeodomain-like
PRINTS	PR00031	1.7E-5	58	67	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	62	85	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-5	67	83	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.2E-15	87	129	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MMLDEAQYSP STQEPFSSID TLATPRKKKN MNKRRFSDEQ IKSLESMFES ESRLEARKKL 60 QLANELGLQP RQVAIWFQNK RARWKSKQLE RDYSILRSNY NSLSTRFESL KKEKQALAVQ 120 LQKLNDLMQK PKEEGGCCVA VNSNEGESEN RDATKCDSEE KASLLYERSA HGLGVVSDED 180 SKIKVEYFGL EEEHNLMSMV EMEPADGSLT TSQEDWGSLD SDGLFGQSNS CCQWWDFWA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G018700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021613627.1	1e-177	homeobox-leucine zipper protein ATHB-12-like isoform X1
Swissprot	P46897	2e-64	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A2C9VSJ4	1e-176	A0A2C9VSJ4_MANES; Uncharacterized protein
STRING	cassava4.1_015049m	1e-177	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-66	homeobox 7

Link Out ? help Back to Top
Phytozome	Manes.05G018700.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]