PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.05G014800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 41985.5 Da PI: 5.0931 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.9 | 1.3e-42 | 12 | 139 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p+G+rFhPtd+elv ++L++k+ + e i+e++++++ePwdL +k+k++++ yfF++rd kya+++r+nr+t++gyWk tgk Manes.05G014800.2.p 12 PVGYRFHPTDQELVGHFLNRKILYPDDEK-MPIAELKVCDFEPWDLSdkSKIKSNDQVFYFFCPRDYKYAHSRRSNRTTNAGYWKPTGKP 100 89*********************999666.67**************8534788888888******************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++v+ +++ +g+k+tLvfyk+++pk+++t+W+mhey+ Manes.05G014800.2.p 101 RKVKGIgTKKPIGTKRTLVFYKKEHPKPVRTKWIMHEYE 139 ***98767778***************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-46 | 6 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.21 | 11 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-25 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MATAIHPKRS NPVGYRFHPT DQELVGHFLN RKILYPDDEK MPIAELKVCD FEPWDLSDKS 60 KIKSNDQVFY FFCPRDYKYA HSRRSNRTTN AGYWKPTGKP RKVKGIGTKK PIGTKRTLVF 120 YKKEHPKPVR TKWIMHEYEY IPQGNFLLCK LKDKSKGHAR ISETKQWASA SESVSTVDSS 180 CGECAPSDLM GSNAEDHNVD EITAGEQNCT VSLDLGNLDQ SEVTANSASD ESDLGYHLAS 240 EPEDENPNEM TATSTYEKCQ FSSQLTSDIE NHNSDKTSEI LVSEQDEWSP HATTPDCGNH 300 SAYDTTDMST LSSPSVLEIN AAEAQFLEGP PTFFDELKAL WEPKDFLNSA LFSPRRTEES 360 LFFSNFLLSG TSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-28 | 12 | 139 | 16 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.05G014800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611637.1 | 0.0 | NAC domain-containing protein 62-like | ||||
Refseq | XP_021611638.1 | 0.0 | NAC domain-containing protein 62-like | ||||
TrEMBL | A0A251KRR0 | 0.0 | A0A251KRR0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009914m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G33060.1 | 9e-36 | NAC 014 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.05G014800.2.p |