PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G008000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 526aa    MW: 57976.1 Da    PI: 9.0084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G008000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-14367416155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          rr+ h++ Er+RRd+i +++  L+ llP++     +K++K+++L  A+eY+k Lq
  Manes.05G008000.1.p 367 RREVHKQSERKRRDKITKKMRALQALLPNS-----TKVDKVSVLDNAIEYLKTLQ 416
                          799**************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-14364420No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16364424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17365433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.475366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-11367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MADEFAELVW ENGQILMRGR STCPKICTSK KPRLRTENNI PDRGDLFKNK RSVQDDHHSD  60
DLFPGSYKND FNIFLGTTRN NTYDEHLTES QIVPECEDEN FRLGNDASPV EIPQITKARR  120
GPLYESSLQR CQASVSISRS IATGSQSLSS MGRLPNSNLQ QLNSRTDKDL RLRNFSLFLR  180
PAMLSKVDDQ HQGATEPADG PSSLRVQGLK SNQDKTPADD TALVLESTSG SGNAKDFYKH  240
QDLVTVKTDQ IQQIAKTSEE SPQDEQSEAP DHRNAIKSKR FQQRAPISNS SLQANTVEGN  300
PDREKSKDQL AVATSLCSWG ASNDLSYSTL RRNNKDKEAM VSSSETDEGD QQVPKPAFAH  360
AGAKRKRREV HKQSERKRRD KITKKMRALQ ALLPNSTKVD KVSVLDNAIE YLKTLQLQLQ  420
IMSQGTSFCM PPMIVGTGMQ PTHIQATNLA HFPTMGLQMD TRIPMGVGCT PAMFSNPAML  480
GGVLPMPFIP PVSAMPFSGA ATPVGFARSA PSLRSNGSIV QNNNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364378RKRREVHKQSERKRR
2374379ERKRRD
3375380RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G008000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX1474660.0KX147466.1 Manihot esculenta cultivar KU50 phytochrome interacting factor 3-like 1 protein (PIL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613189.10.0transcription factor PIF3-like
TrEMBLA0A2C9VSA00.0A0A2C9VSA0_MANES; Uncharacterized protein
STRINGcassava4.1_005881m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.16e-26phytochrome interacting factor 3-like 1