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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G005300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 495aa MW: 55405.7 Da PI: 5.1254 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.4 | 8.3e-34 | 20 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp+G rFhP+deelv++yLk+k g+++ + i+ev++++++P+dLp + ++++k wyfF+ r ++++g +++r++k+gyWk tg Manes.05G005300.1.p 20 LPVGWRFHPSDEELVDYYLKRKRLGHPIYGLD-ISEVQVCDYDPRDLPgLsMNNSRDKVWYFFCLRLYHNNRG-QAKRKAKDGYWKGTGD 107 799************************98855.***************6434455888********9987666.56666799******** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+ + ++e++g+k+tLvf+ +pk t+Wv+hey+ Manes.05G005300.1.p 108 LRSVTPEdSDEEIGTKRTLVFH---NPK--ATQWVIHEYEY 143 *****9867788**********...455..79*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-39 | 13 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.367 | 20 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-23 | 21 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MTDNNSSGMT CPPQSDSQNL PVGWRFHPSD EELVDYYLKR KRLGHPIYGL DISEVQVCDY 60 DPRDLPGLSM NNSRDKVWYF FCLRLYHNNR GQAKRKAKDG YWKGTGDLRS VTPEDSDEEI 120 GTKRTLVFHN PKATQWVIHE YEYTAALNLP TKGDYVLCKL KISKNKKKAS KKDEKAEPDS 180 KKTRPNKKSR KSESNGNLAS ASASTSKNRK LEGMTTNSAY GEGEPNSLMI LDLENQNLNT 240 MASISTYNKD EMSSLMTSNF ENGYYKRAIV STCNKGETSC PMASDLENHC PEEMTAMSSY 300 KKVNPSCPRA SVLENLSPNE ITSLSTNSKG DTSFFRTCDI ENKKSDAFAK VKSIDLVTWD 360 FEKQNPTKNI DIPVPTEGEQ IPQSPSVASN AGETTCQEVQ SQYKKTSVPI PEDYAGSSTT 420 SNEEAMFQVQ SQYKNTEMPI LKDNGDLFTA FDAEAKFPEI NSQMLEELLA FYELEDSLNS 480 APQQPIPEES PSIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-22 | 19 | 165 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G005300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021611970.1 | 0.0 | protein NTM1-like 9 isoform X1 | ||||
TrEMBL | A0A2C9VU82 | 0.0 | A0A2C9VU82_MANES; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17031 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02230.1 | 2e-30 | NAC domain containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G005300.1.p |