 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Manes.04G159200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
SRS |
| Protein Properties |
Length: 268aa MW: 29000.8 Da PI: 7.6608 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.04G159200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 186.2 | 1.2e-57 | 76 | 236 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstkls 92
++ C+dCGn+akk+C+++RCRtCCksrg+dCa h+kstWvpaa+rr r+++ ss +++ + +kr+re+ s++++ + st+ +
Manes.04G159200.1.p 76 SSVCRDCGNRAKKECEYRRCRTCCKSRGYDCAPHIKSTWVPAARRRGRHATDVGGSSGSSSGGggGGDGNKRPRENVSATSN-SFSTSNN 164
578*********************************************8888777666655555678888888887332222.2222223 PP
DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+a + +++ +s lP++v+++avfrcvrv++++ ge+e+aYq+ v+i+GhvfkG+LydqG++e
Manes.04G159200.1.p 165 NAAAFFSFDNASncqdasfkqsLPSQVRAPAVFRCVRVTAISGGEAEVAYQAMVNISGHVFKGFLYDQGIDE 236
3333333333335666677778***********************************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MLGLHNIFLI TPPVQPPPPP SSSFHHPDQQ PISVHEQCNI LNNQDSWTTL KRYNLQESSR 60
DALNIDGDNE NCNTSSSVCR DCGNRAKKEC EYRRCRTCCK SRGYDCAPHI KSTWVPAARR 120
RGRHATDVGG SSGSSSGGGG GGDGNKRPRE NVSATSNSFS TSNNNAAAFF SFDNASNCQD 180
ASFKQSLPSQ VRAPAVFRCV RVTAISGGEA EVAYQAMVNI SGHVFKGFLY DQGIDENNLN 240
RDSTSPIVDP PDPYLASATH RVFQGNE*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G12330.2 | 3e-42 | Lateral root primordium (LRP) protein-related |
