 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Manes.04G158200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
Trihelix |
| Protein Properties |
Length: 333aa MW: 36930.8 Da PI: 10.0735 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.04G158200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 47.9 | 3.6e-15 | 46 | 128 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
+W++ v +L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ s++ ++ +l
Manes.04G158200.1.p 46 EWSEGAVSCLLEAYESKWILRNRAKLKGHDWEDVARYVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWHLYPRL 128
5*************************************854444555566679**************9999886......357777776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MDKETNQESP SLPSNNNSIK EDPSRKRLSA TGAGGGGGGD RLKRDEWSEG AVSCLLEAYE 60
SKWILRNRAK LKGHDWEDVA RYVSSRANCT KSPKTQTQCK NKIESMKKRY RSESATADAS 120
SWHLYPRLDL LLRGSSAAAA VAPPPPQQQP PPSLQASNHP PPLILLETSH LLPQLPPQPP 180
LPPAIVTAQN SHGSNGVDRG AKEDGDGTKL SDHVSDKNVM DTDSSTPALY SDKEKLRSKK 240
LKMRVEQKKR RRREEWEIAD SIRWLAEVVV RSEKARMDAM REIEKMRIEA EAKRGEMDLK 300
ITEIIANTQL EIAKLFARVG KGVDSSLRIG RS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 238 | 249 | KKLKMRVEQKKR |
| 2 | 246 | 252 | QKKRRRR |
| 3 | 247 | 252 | KKRRRR |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 1e-103 | sequence-specific DNA binding transcription factors |
