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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G150100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 42281.9 Da PI: 4.4978 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Manes.04G150100.2.p 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 164 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.04E-33 | 115 | 173 | No hit | No description |
SuperFamily | SSF54171 | 3.01E-22 | 115 | 174 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.092 | 115 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-36 | 115 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 115 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-12 | 116 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MCGGAIISDF IPATAAGRSS RRLTADFLWP DLKKPIGKIV GDLDDDFEAD FQEFKDESDV 60 DEEDDVLFDV KPFSFSATAS PPPRNRSPSR GSTAVKSVEF NGLAEKSAKR KRKNQYRGIR 120 QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDAEAR RIRGKKAKVN FPDEAPRASP 180 KRTMKANPQK PLPKRNATES MSYLNNPDQD YFNTLGSVDE KPLVSQFDLM DSFPANGDAT 240 VKSIPPCDNV PTFFNSDQGS NSFECSDFGW GEQASKTPEI SSVLSATPEI DESLFMDDAN 300 PKKKMKSDSE NAVPIEESNG KSLSEELLAF DNQMNFQMPY LEGSWEASLD GFLNGDVTQD 360 GGNPMDLWSF DDLPNMVGGV Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-21 | 115 | 172 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 9e-21 | 114 | 174 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G150100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY973613 | 0.0 | AY973613.1 Manihot esculenta ethylene response factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021610674.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_021610675.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 4e-86 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | Q52QY1 | 0.0 | Q52QY1_MANES; Ethylene response factor | ||||
STRING | cassava4.1_009652m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 1e-79 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G150100.2.p |