PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G143700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 603aa    MW: 65657 Da    PI: 8.1346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G143700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09485533348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Manes.04G143700.2.p 485 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 533
                          7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225478537IPR017930Myb domain
SuperFamilySSF466892.84E-16480546IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-13480537IPR009057Homeodomain-like
SMARTSM007172.9E-9482535IPR001005SANT/Myb domain
CDDcd116602.28E-19484534No hitNo description
PfamPF002497.1E-7485533IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MEVKGLLIDE KNKMRIVTDT GQPMGCISNE VSSSGMLLQL ESSEGLSQSE NTEVDPEKLH  60
ARLEYIEEML QRVKEEERLR LSCGSADYSS AYVIIDSQCS DQHDKLPAID EKLQCEIPLQ  120
ETVPSLAPSL IESHLHQSGS IDKCLNSPKK PTEGGALTST GVATSKPDFS KLKEEICLDN  180
LSIKELHETF KATFGRETTV KDKQWLKRRI TMGLTNSCDV SATTFIIKDN KLVKKGKEDC  240
CDNGDGAFAN DPPTGATING SQQEAPITHG GQVEDQVVSD KRSRSVGDNS GSEDHHAEHR  300
AVKRVRKPTK RYIEELSEVE SKESSGKSNS KLKCSGLGQM SSKSHIGSVG NISSDGRTVV  360
TRTDSLGGSG IQIPCVSRVR RSRPRKNFMA LLEFNPSSMS VTAAQLKKAL NAHNILLDND  420
ESEKDRSPPA KFVGVTDKDI QISAIDAVGG HHKVLKLVDS TGASDDNVVT VPTSKGGIRR  480
KHHRAWTLSE VMKLVEGVSR YGAGRWSEIK RLAFASYSYR TSVDLKDKWR NLLKASFSQI  540
PSDKGINCRK NAASVPIPEP ILLRVRELAA MQCQVPPSLN SSKGGGSGSS ADSVHEKQSG  600
YL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379385RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G143700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610424.10.0uncharacterized protein LOC110613543 isoform X1
RefseqXP_021610426.10.0uncharacterized protein LOC110613543 isoform X3
TrEMBLA0A2C9W3X20.0A0A2C9W3X2_MANES; Uncharacterized protein
TrEMBLA0A2C9W5120.0A0A2C9W512_MANES; Uncharacterized protein
STRINGcassava4.1_003191m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-102TRF-like 6