PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G143700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 661aa    MW: 72194.3 Da    PI: 7.3617
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G143700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.6e-09543591348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Manes.04G143700.1.p 543 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 591
                          7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225536595IPR017930Myb domain
SuperFamilySSF466893.21E-16538604IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-13538595IPR009057Homeodomain-like
SMARTSM007172.9E-9540593IPR001005SANT/Myb domain
CDDcd116603.11E-19542592No hitNo description
PfamPF002498.0E-7543591IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
METEFGVEGN DERKYEEAGF RKIYSSLSST KQLTDPVVYK LVRVEGDGRL VPATDDEVME  60
VKGLLIDEKN KMRIVTDTGQ PMGCISNEVS SSGMLLQLES SEGLSQSENT EVDPEKLHAR  120
LEYIEEMLQR VKEEERLRLS CGSADYSSAY VIIDSQCSDQ HDKLPAIDEK LQCEIPLQET  180
VPSLAPSLIE SHLHQSGSID KCLNSPKKPT EGGALTSTGV ATSKPDFSKL KEEICLDNLS  240
IKELHETFKA TFGRETTVKD KQWLKRRITM GLTNSCDVSA TTFIIKDNKL VKKGKEDCCD  300
NGDGAFANDP PTGATINGSQ QEAPITHGGQ VEDQVVSDKR SRSVGDNSGS EDHHAEHRAV  360
KRVRKPTKRY IEELSEVESK ESSGKSNSKL KCSGLGQMSS KSHIGSVGNI SSDGRTVVTR  420
TDSLGGSGIQ IPCVSRVRRS RPRKNFMALL EFNPSSMSVT AAQLKKALNA HNILLDNDES  480
EKDRSPPAKF VGVTDKDIQI SAIDAVGGHH KVLKLVDSTG ASDDNVVTVP TSKGGIRRKH  540
HRAWTLSEVM KLVEGVSRYG AGRWSEIKRL AFASYSYRTS VDLKDKWRNL LKASFSQIPS  600
DKGINCRKNA ASVPIPEPIL LRVRELAAMQ CQVPPSLNSS KGGGSGSSAD SVHEKQSGYL  660
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437443RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G143700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610424.10.0uncharacterized protein LOC110613543 isoform X1
TrEMBLA0A2C9W5120.0A0A2C9W512_MANES; Uncharacterized protein
STRINGcassava4.1_003191m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-117TRF-like 6