PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G141700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 273aa    MW: 29852.6 Da    PI: 9.5626
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G141700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+++v+++G+g Wk I +        + R+  ++k++w+++
  Manes.04G141700.1.p  5 KQKWTAEEEEALLNGVAKHGPGKWKNILKDPDfapflTQRSNIDLKDKWRNL 56
                         79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.993161IPR017930Myb domain
SuperFamilySSF466893.01E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-16457IPR009057Homeodomain-like
SMARTSM007171.3E-7459IPR001005SANT/Myb domain
PfamPF002495.7E-10556IPR001005SANT/Myb domain
CDDcd116608.22E-21656No hitNo description
SuperFamilySSF467851.85E-16109191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.2E-17109174IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.4E-14111183IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.824111179IPR005818Linker histone H1/H5, domain H15
PfamPF005386.2E-11113172IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLNGV AKHGPGKWKN ILKDPDFAPF LTQRSNIDLK DKWRNLSVSN  60
SAQGSKDKSR AAKVKTVTVT PPSNAPNSAP ADGSADALMD DLSNNAADGK NAPRYNAMIF  120
EALSTIKDTN GCDISAIVHF IEQRHEVPQN FRRLLSSRLR RLVSQGKLEK VQNCYRISKD  180
ASLGTKTPTP KQKDVRPRQS QNSGLLSSKT VEEAAKAAAY NVAEAENKSF LAAEAVKEAE  240
RVSKLAEDTD STLQLVKEIY EQCSRGEIVL LA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G141700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611324.10.0telomere repeat-binding factor 4-like
SwissprotF4I7L11e-86TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A2C9W2C80.0A0A2C9W2C8_MANES; Uncharacterized protein
STRINGcassava4.1_023473m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.16e-74MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]