PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G136500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 422aa    MW: 46606.6 Da    PI: 5.6886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G136500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.7e-08332372954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Manes.04G136500.1.p 332 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 372
                          69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14328388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-12331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-5332372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-4345377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDGLGWDDSQ VLADTEPLWS NPQHASPWWN NQENEESFNI LSKMDLTEDI FNQFQDLQKR  60
QVTTKMAENT VAARSGAEMS WGDASTQELY SSPSITGFGM NINQSRIING LPNGKAGVST  120
AGSLESLDCL LSATNSNTDT SVEDDGISMI FSACRNLWNF AANSAVSSGE SENNTSSARN  180
KEMHCRVSEL DESISQSSSD KKSSPTKPVP IKRTDDQNEL KVGANNKHPC FDLLQTDSPT  240
SDGGFQLISE NPPKPKRFRS DKRPRSSNIN FQQPSSSVSS SIDEVDPEAI AQMKEMIYRA  300
AAFRPVNLGL EVVEKPKRKN VRISTDPQTV AARQRRERIS ERIRVLQRLV PGGSKMDTAS  360
MLDEAANYLK FLRSQVKALE NLGHTLDSVN FPPTPFNSQS FPHANSSFSL QNPNHIHHPQ  420
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G136500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610116.10.0transcription factor bHLH87-like
RefseqXP_021610117.10.0transcription factor bHLH87-like
SwissprotQ8S3D22e-86BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A251LIQ60.0A0A251LIQ6_MANES; Uncharacterized protein
STRINGcassava4.1_009761m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]