PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G131000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 334aa    MW: 36598.8 Da    PI: 6.8527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G131000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000431992371255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Manes.04G131000.1.p 199 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237
                          6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.579187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10197250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-6197241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMAGNPSWWN MHPPSQQPSS LLSSSLSPSL FPSQYVLGSS SSSSSSFPFN SLPDNQELPQ  60
SWSQLLLGGL PGEEDRFCLS HFQNKKLEDC EDQILNPYPR VSVVADIKRE VSRKSNLYGH  120
GDEEFQLPRP TWSPAIPVSS PRSCVTSLSS NVLEYSFNKP DTRNQHPDQS SECNSTATGG  180
MCKKPRVQPS SSQQPLKVRK EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQSQI  240
EALSSPYLAT ASSNMSNQQS VQGERNSVFP EDPGQLLNDI CLKRKGDRNQ QDSNEKPKDL  300
RSRGLCLVPV SCTHHVGSDN GADYWAPAIG GGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G131000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1450109e-53BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610494.10.0transcription factor bHLH68-like
SwissprotQ8S3D12e-78BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2C9W2600.0A0A2C9W260_MANES; Uncharacterized protein
STRINGcassava4.1_011528m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]