PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G131000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 334aa MW: 36598.8 Da PI: 6.8527

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G131000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00043	199	237	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Manes.04G131000.1.p 199 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.579	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	197	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-10	197	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.09E-6	197	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MMAGNPSWWN MHPPSQQPSS LLSSSLSPSL FPSQYVLGSS SSSSSSFPFN SLPDNQELPQ 60 SWSQLLLGGL PGEEDRFCLS HFQNKKLEDC EDQILNPYPR VSVVADIKRE VSRKSNLYGH 120 GDEEFQLPRP TWSPAIPVSS PRSCVTSLSS NVLEYSFNKP DTRNQHPDQS SECNSTATGG 180 MCKKPRVQPS SSQQPLKVRK EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQSQI 240 EALSSPYLAT ASSNMSNQQS VQGERNSVFP EDPGQLLNDI CLKRKGDRNQ QDSNEKPKDL 300 RSRGLCLVPV SCTHHVGSDN GADYWAPAIG GGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G131000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT145010	9e-53	BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610494.1	0.0	transcription factor bHLH68-like
Swissprot	Q8S3D1	2e-78	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2C9W260	0.0	A0A2C9W260_MANES; Uncharacterized protein
STRING	cassava4.1_011528m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-78	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.04G131000.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]