PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G111200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 664aa MW: 76279.8 Da PI: 6.2475 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.5 | 1.6e-21 | 60 | 142 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn +Ake GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++ +w+++++eleHnH ++ Manes.04G111200.1.p 60 FYNCFAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENRRWRIIEVELEHNHLIS 142 9***************99997.66779**************99888.....***********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-18 | 60 | 142 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.8E-22 | 261 | 347 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.8E-5 | 536 | 581 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.248 | 548 | 584 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-5 | 559 | 586 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MDEVSLNTEP IGDDDADEFE IEGDCGIAEY VGQTGAIQGE NPIPPAVGME FESYEDVYYF 60 YNCFAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMENRRWRI IEVELEHNHL ISPASGKFYK SHKLIGAGTK RTLQLDSPDE VQKIKMYRTV 180 IIDSEGNGVV DDEGGFRNFV HSNQLKLREG DARGVQDLFC RLQLMDPNFF YVVDLNEKGC 240 MRNLFWADAR SRATYGYFGD VVAIDTTCLR DKFEVPLVSF IGVNHHGHST LLGCGLLAGE 300 TSESYIWLLR AWITCMLGRP PQAVITDQCR NLQTAVADVF PRASHCLHLA CIMQKFPENL 360 GGLLEYEAIK EALTRIVYYF LRPEEFEAAW EEKVQHHGIR DHKWIQALYE DRKRWVPAYV 420 KETFLAGLLP FQQNEMVPSI FEGYLDKHTP LKDFLAKYDQ ALQMNLQLEA LADMDSRNSS 480 LVLKSRCYFE LQLSKLYTNE TLKRFGKEVE GMYACFSTRQ VTIDGPLITY IVKEQVEVDG 540 NRQETRDFEV MYNASEMDVL CVCGLFNFKG YLCRHALSVL NQNGLEEIPP QYILTRWRKD 600 VKRSYAVDHS SGGIDTNNPV HRYDHLYKCI VRVVEEGRKS QDRYKVTLQG LGEILNRLHL 660 VED* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G111200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021610788.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_021610789.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_021610790.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A2C9W3P6 | 0.0 | A0A2C9W3P6_MANES; Uncharacterized protein | ||||
STRING | XP_008228718.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G111200.1.p |
Publications ? help Back to Top | |||
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