PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 664aa MW: 76279.8 Da PI: 6.2475

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G111200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.5	1.6e-21	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn +Ake GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++ +w+++++eleHnH ++ Manes.04G111200.1.p 60 FYNCFAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENRRWRIIEVELEHNHLIS 142 9*************99997.66779**********99888.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-18	60	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-22	261	347	IPR018289	MULE transposase domain
Pfam	PF04434	1.8E-5	536	581	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.248	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MDEVSLNTEP IGDDDADEFE IEGDCGIAEY VGQTGAIQGE NPIPPAVGME FESYEDVYYF 60 YNCFAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMENRRWRI IEVELEHNHL ISPASGKFYK SHKLIGAGTK RTLQLDSPDE VQKIKMYRTV 180 IIDSEGNGVV DDEGGFRNFV HSNQLKLREG DARGVQDLFC RLQLMDPNFF YVVDLNEKGC 240 MRNLFWADAR SRATYGYFGD VVAIDTTCLR DKFEVPLVSF IGVNHHGHST LLGCGLLAGE 300 TSESYIWLLR AWITCMLGRP PQAVITDQCR NLQTAVADVF PRASHCLHLA CIMQKFPENL 360 GGLLEYEAIK EALTRIVYYF LRPEEFEAAW EEKVQHHGIR DHKWIQALYE DRKRWVPAYV 420 KETFLAGLLP FQQNEMVPSI FEGYLDKHTP LKDFLAKYDQ ALQMNLQLEA LADMDSRNSS 480 LVLKSRCYFE LQLSKLYTNE TLKRFGKEVE GMYACFSTRQ VTIDGPLITY IVKEQVEVDG 540 NRQETRDFEV MYNASEMDVL CVCGLFNFKG YLCRHALSVL NQNGLEEIPP QYILTRWRKD 600 VKRSYAVDHS SGGIDTNNPV HRYDHLYKCI VRVVEEGRKS QDRYKVTLQG LGEILNRLHL 660 VED*

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MDEVSLNTEP IGDDDADEFE IEGDCGIAEY VGQTGAIQGE NPIPPAVGME FESYEDVYYF  60
YNCFAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMENRRWRI IEVELEHNHL ISPASGKFYK SHKLIGAGTK RTLQLDSPDE VQKIKMYRTV  180
IIDSEGNGVV DDEGGFRNFV HSNQLKLREG DARGVQDLFC RLQLMDPNFF YVVDLNEKGC  240
MRNLFWADAR SRATYGYFGD VVAIDTTCLR DKFEVPLVSF IGVNHHGHST LLGCGLLAGE  300
TSESYIWLLR AWITCMLGRP PQAVITDQCR NLQTAVADVF PRASHCLHLA CIMQKFPENL  360
GGLLEYEAIK EALTRIVYYF LRPEEFEAAW EEKVQHHGIR DHKWIQALYE DRKRWVPAYV  420
KETFLAGLLP FQQNEMVPSI FEGYLDKHTP LKDFLAKYDQ ALQMNLQLEA LADMDSRNSS  480
LVLKSRCYFE LQLSKLYTNE TLKRFGKEVE GMYACFSTRQ VTIDGPLITY IVKEQVEVDG  540
NRQETRDFEV MYNASEMDVL CVCGLFNFKG YLCRHALSVL NQNGLEEIPP QYILTRWRKD  600
VKRSYAVDHS SGGIDTNNPV HRYDHLYKCI VRVVEEGRKS QDRYKVTLQG LGEILNRLHL  660
VED*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G111200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610788.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_021610789.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_021610790.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2C9W3P6	0.0	A0A2C9W3P6_MANES; Uncharacterized protein
STRING	XP_008228718.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Manes.04G111200.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]