PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.04G104400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 287aa MW: 31572.1 Da PI: 7.1104

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G104400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Manes.04G104400.1.p 111 FSCNYCQRKFYSSQALGGHQNAH 133 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.9E-6	108	138	No hit	No description
PROSITE profile	PS50157	11.427	111	138	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEPLSSEVCL SETSSSIVSV SNAPSKFSLN VSMDNPKGRK QLQEEEEEEE EERENKNEDT 60 SDRDLVLDLS LLSGKDSKPE LINLIDSFDM ESSQKSSLDT PQGNEIEPRV FSCNYCQRKF 120 YSSQALGGHQ NAHKRERTLA KRGQRINGGG SFSLGHHHNS QINRYTSMAS LPLHGLLNRS 180 LGIQVHSMIH KPSFVPSSTL SSSNVHGKNG WSRQPIGQQP AVGRLPSESF HMGTRIGSSN 240 GVARFESAGK FSPAGERMGG YWCDSGVNHL KTKQDDLQKL DLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G104400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610040.1	0.0	zinc finger protein 1
TrEMBL	A0A2C9W3U1	0.0	A0A2C9W3U1_MANES; Uncharacterized protein
STRING	cassava4.1_013271m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	3e-41	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Manes.04G104400.1.p