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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G064600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21223.9 Da PI: 8.0963 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 227.2 | 4.3e-70 | 2 | 158 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 +++s se+vCyv+CnfCntilavsvPs+ lf +vtvrCGhC++llsvn+ + q+ + ++ + ++ + ++e+l++ s Manes.04G064600.2.p 2 SMDSVSERVCYVHCNFCNTILAVSVPSSNLFAIVTVRCGHCANLLSVNMGSSLQTFPLQDP--------QSQKVHLSTEDLNKDC---GS 80 67899*************************************************9999985........3444444444444333...33 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+ ++++ +++ +d+e pr+pp +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Manes.04G064600.2.p 81 SSKCNKVTAFESGDDHEPPRMPP-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 158 334444445678999*****999.8****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.7E-74 | 6 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.49E-8 | 103 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.7E-5 | 106 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSMDSVSERV CYVHCNFCNT ILAVSVPSSN LFAIVTVRCG HCANLLSVNM GSSLQTFPLQ 60 DPQSQKVHLS TEDLNKDCGS SSKCNKVTAF ESGDDHEPPR MPPVRPPEKR QRVPSAYNRF 120 IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKL EGNKHAKVDH QTFAGEGTHK 180 STGFYDINGS L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G064600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609667.1 | 1e-143 | putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 2e-81 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2C9W092 | 1e-142 | A0A2C9W092_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016957m | 1e-116 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-74 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G064600.2.p |
Publications ? help Back to Top | |||
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