PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G054500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 353aa    MW: 37763.9 Da    PI: 8.5645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G054500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-10286331655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L+el+P+     +k  s a++L +Av++Ik Lq
  Manes.04G054500.1.p 286 SIAERERRTRISGRLKKLQELVPNM----DKQTSYADMLDLAVQHIKVLQ 331
                          689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-15283345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.32E-12284335No hitNo description
Gene3DG3DSA:4.10.280.102.1E-13285343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-12286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-8286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAQPHWSKPD KPTAVYPPSS SPQNLTVPTG LTRYGSAPGS LLTRAVDSVI GSSREFSALG  60
SSSSSLVSHG HYFPGDSSSL TTEPNCKVNS SSDPRPPPKS STSGGLQRSY GLSDINGCLL  120
RQKSSPAGFL SNLSTENAGF SITPGSGGYN SQNGATGGHT VSRLKSQLSF TRQDSLSQIS  180
EVNESVAEGM NSNNGRQNSS HSYAAASFSM EPWDNTNSIV FSGPPSKRAK NIDGDIFNCL  240
NGLETQFSLP QTSLEIATVE KLLSIPEDSV PCKIRAKRGC ATHPRSIAER ERRTRISGRL  300
KKLQELVPNM DKQTSYADML DLAVQHIKVL QNEVQKLHNE LENCTCGCRP NS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G054500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611092.10.0transcription factor bHLH128-like isoform X1
SwissprotQ8H1022e-90BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2C9VZS00.0A0A2C9VZS0_MANES; Uncharacterized protein
STRINGcassava4.1_010743m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]