PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G043400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family FAR1
Protein Properties Length: 217aa    MW: 25000.6 Da    PI: 8.4713
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G043400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.39.7e-2751139290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k  + r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+
  Manes.04G043400.1.p  51 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHPLV 139
                          9**************************************999999989***************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-2551139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDLDEGIEIA ESSAGQELVV QESDSNVQGN DSIVEPYEGM EFESEDAAKI FYDEYARRVG  60
FVMRVMSCRR SERDGRILAR RLGCNKEGYC VSIRGKFGNV RKPRPSTREG CKAMIHVKFD  120
KSGKWVITKF VKDHNHPLVV APREARQTMS EKDKKIQELS MELRNKKRLC AMYQEQLNAF  180
IKIVEEHSDR LTKKVQKVVG NLKEFESIEQ ELLQHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G043400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609623.11e-160protein FAR1-RELATED SEQUENCE 2-like
TrEMBLA0A2C9VZE21e-158A0A2C9VZE2_MANES; Uncharacterized protein
STRINGXP_002533360.11e-135(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-112FAR1 family protein