PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G043300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family FAR1
Protein Properties Length: 245aa    MW: 28174.4 Da    PI: 6.9521
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G043300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.38.3e-2671162191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+ +++k ++   ++r+ tr gC+a+l++  ++ gkw ++ +++eH+Hel
  Manes.04G043300.1.p  71 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAGKSTKrENGVFSSRPATREGCNAMLRIAAKDGGKWIIYGFVKEHSHEL 160
                          6****************************************99988823344569**********************************9 PP

                 FAR1  90 ap 91 
                          +p
  Manes.04G043300.1.p 161 NP 162
                          75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-2371162IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MASTSSHQFH SNGNYRRWLD ETFDGPETTE DELSDNLDGN DNIVRQSVQN FHIALEPFIG  60
MEFDSAEDAR EFYEMYGRRM GFTIRNNRTR RSLKDNSIIG REFVCSKEGF RAGKSTKREN  120
GVFSSRPATR EGCNAMLRIA AKDGGKWIIY GFVKEHSHEL NPIKIPPRRS HRIAFNEDGK  180
DLKIRELSTE LHREKKKSAA YQEQLQIVLK CIEEHTQRLS LKIEAVSNKV RELECEEPDS  240
SDSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G043300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610463.10.0protein FAR1-RELATED SEQUENCE 4-like
TrEMBLA0A2C9W1Q70.0A0A2C9W1Q7_MANES; Uncharacterized protein
STRINGcassava4.1_014879m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15811911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-48FAR1 family protein