PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G035700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family FAR1
Protein Properties Length: 97aa    MW: 10960.7 Da    PI: 10.9557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G035700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.12.5e-0715505590
                 FAR1 55 raetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         ++++rt+C a+l   ++ ++ w+vtkl++eHn el 
  Manes.04G035700.1.p 15 SSSKRTNCIARLSAILRCNSFWQVTKLQTEHNNELD 50
                         6799****************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-51550IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MEIDCDRGRK LGGDSSSKRT NCIARLSAIL RCNSFWQVTK LQTEHNNELD SHMSKFMRAH  60
KSVPLVIKRR LEAHDIVGIR SSKNVRLLEV QAKGRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G035700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623857.11e-41protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2C9W0K65e-64A0A2C9W0K6_MANES; Uncharacterized protein
STRINGcassava4.1_029257m4e-44(Manihot esculenta)