PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G002000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27974.3 Da PI: 6.7988 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.2 | 5.1e-47 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rF Pt+eelv++yL++k+egk+ el++vi+ ++iy+ ePw+Lpk ++++++++w+fF++r++++a+g r+nr+t++gyWkat Manes.04G002000.1.p 4 LPPGLRFYPTEEELVSFYLHNKLEGKRQELDRVIPVINIYNQEPWNLPKlageRCRGDTEQWFFFTPRQEREARGGRPNRTTETGYWKAT 93 79****************************999***************656766666888****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++++g+kkt+vfykg+ap g+kt+W m+eyr+ Manes.04G002000.1.p 94 GSPGYVYSSDNRVIGVKKTMVFYKGKAPAGRKTKWKMNEYRA 135 ****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-49 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.286 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-24 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEVLPPGLRF YPTEEELVSF YLHNKLEGKR QELDRVIPVI NIYNQEPWNL PKLAGERCRG 60 DTEQWFFFTP RQEREARGGR PNRTTETGYW KATGSPGYVY SSDNRVIGVK KTMVFYKGKA 120 PAGRKTKWKM NEYRAIEEVA DSYNTAVPML RHEFSLCRVY VISGSFRAFD RRPLEAAAID 180 NRLVRNTATS AQDTRIVDNT SSSETSYSGG DHAYPSGAEG SANWEMVEDL VQPLWDWEQL 240 NWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-35 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-35 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-35 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-35 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-35 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-35 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-35 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-35 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-35 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-35 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-35 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-35 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 2e-35 | 4 | 160 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 2e-35 | 4 | 160 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G002000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605174 | 0.0 | KR605174.1 Manihot esculenta NAC transcription factors 36 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609372.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 5e-99 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0M4G3P6 | 0.0 | A0A0M4G3P6_MANES; NAC transcription factors 36 | ||||
STRING | cassava4.1_014914m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-101 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G002000.1.p |
Publications ? help Back to Top | |||
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