PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G165600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24803 Da PI: 5.8398 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.6e-09 | 67 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE+ RR+r+N++f+ L ++l + + + +K +iL A++ + L Manes.03G165600.1.p 67 ATKACREKLRRERLNDRFQDLSSVLEPG---RPARTDKTAILADAIRVLTRL 115 57889**********************8...789************988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-12 | 56 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.935 | 64 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-6 | 65 | 120 | No hit | No description |
Pfam | PF00010 | 9.6E-7 | 68 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-11 | 68 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-7 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDSLEGDCCW DFLDYNFFEE TTTSSDLLWS NNRSGGLDID FSSGGTESQE KQCSRKRGRS 60 DSCTKPATKA CREKLRRERL NDRFQDLSSV LEPGRPARTD KTAILADAIR VLTRLKTEAQ 120 ELKETNENLL EEIKTLKAEK NELREEKLAL KADKERMEQQ LKVMTVPPSG FMPAHPAAYH 180 AGLNKMAAFP NYGLMPMWQL PLAARDTSRD HEYWPPAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G165600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021608901.1 | 1e-162 | transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 2e-73 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A2C9WA88 | 1e-161 | A0A2C9WA88_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015883m | 1e-137 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 1e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G165600.1.p |