PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G165200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 151aa    MW: 17202.8 Da    PI: 6.5323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G165200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-202273256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr+++ +g+++AeIrdps +g  +r +lg+f+ta eAa+a+++a+ +l+g+
  Manes.03G165200.1.p 22 RYRGVRRRP-WGKFAAEIRDPSRQG--ARLWLGTFDTAAEAARAYDRAAFNLRGH 73
                         6********.**********96543..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.5132280IPR001471AP2/ERF domain
CDDcd000181.44E-272282No hitNo description
Gene3DG3DSA:3.30.730.103.4E-312281IPR001471AP2/ERF domain
PfamPF008474.9E-152273IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-232281IPR016177DNA-binding domain
SMARTSM003801.7E-362286IPR001471AP2/ERF domain
PRINTSPR003675.9E-112334IPR001471AP2/ERF domain
PRINTSPR003675.9E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEGSDGNRGK KENEEKGREE VRYRGVRRRP WGKFAAEIRD PSRQGARLWL GTFDTAAEAA  60
RAYDRAAFNL RGHLAILNFP NDYYPQLVGS TPRPHHSFSS SSSSSASQSF EWGSSSTGQE  120
RQVFEFEYLD DKVLEDLLES EEEKKKRHQD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-32171339114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G165200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608691.11e-107ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-53ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2C9W9M31e-105A0A2C9W9M3_MANES; Uncharacterized protein
STRINGcassava4.1_020965m1e-106(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-22ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]