PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G156900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 254aa    MW: 29491.4 Da    PI: 9.615
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G156900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.3e-192269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd ll++ v+++G g+W+++ar  g++R +k+c++rw +yl
  Manes.03G156900.1.p 22 KGPWTAEEDRLLIEHVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                         79********************************************97 PP
2Myb_DNA-binding51.91.8e-1675119147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Manes.03G156900.1.p  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.3631773IPR017930Myb domain
SuperFamilySSF466892.64E-3019116IPR009057Homeodomain-like
SMARTSM007171.7E-162171IPR001005SANT/Myb domain
PfamPF002493.2E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-232376IPR009057Homeodomain-like
CDDcd001676.33E-122469No hitNo description
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129419.3574124IPR017930Myb domain
PfamPF002491.0E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2477123IPR009057Homeodomain-like
CDDcd001678.72E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSLGVMAGQL TWGGFIEEGW RKGPWTAEED RLLIEHVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLS PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKLSPEN SEKAKTRLLK RQLFQQQQQQ QQLQQQQQQQ QMQLNQLDMK KIMSLLDENE  180
TKVPYMNQTR QDMTTTYPNT TEEHGLLYNL LNANASVPEA SNEEFLWDGL WNLDDFHGNF  240
GVACASTKLA FTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-28912414128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G156900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673983.11e-141transcription factor MYB2-like
TrEMBLA0A2C9W7Z70.0A0A2C9W7Z7_MANES; Uncharacterized protein
STRINGcassava4.1_014512m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-84myb domain protein 305