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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G147500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 37682.2 Da PI: 7.7445 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 157 | 206 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g Manes.03G147500.1.p 157 SFRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAVAYDTAAYMLRG 206 59******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.78E-32 | 156 | 216 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 157 | 215 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.077 | 157 | 214 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-36 | 157 | 220 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 158 | 215 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-12 | 158 | 206 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-11 | 158 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-11 | 180 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
METFKHEDLP CWKSFHGMAT GSKYFHDSII WGASTDITTY PDNGTSGNRP TTKSLIESSN 60 IPQELRFLNP SEQMNTTDSL GENQRFEPMC LFPNTSFCMH QLGQIQGQPS EERLKINPTK 120 GFNDHWLGTT KTQLMKYTGR RLQNQHHQKS ASSPGKSFRG VRQRHWGKWV AEIRLPRNRT 180 RVWLGTFDTA EEAAVAYDTA AYMLRGDDAR LNFPDLKHQT KANSLNGTTA ALLEAKLHAI 240 SGQEKHSIHI GPPSPEKHAH DNNTKQLKGF GQNPSRKQWQ FELESKVEFD CQVNAKENAQ 300 EVVAFDKDAV QLNRIPSLDM DLIWDAMLVS DS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 153 | 214 | 1 | 63 | ATERF1 |
3gcc_A | 3e-20 | 153 | 214 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G147500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021608744.1 | 0.0 | ethylene-responsive transcription factor ERF062-like isoform X2 | ||||
TrEMBL | A0A2C9WA33 | 0.0 | A0A2C9WA33_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021788m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 3e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G147500.1.p |