PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G120800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 19841.4 Da PI: 8.0454 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.7 | 2.4e-09 | 142 | 182 | 4 | 47 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 ++ rE+ RRdr+N++f eL ++l + + +K +Ka+iL A Manes.03G120800.1.p 142 SKASREKLRRDRLNDKFVELGSILEPG---RPPKTDKAAILIDA 182 5678**********************8...89*********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-8 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.252 | 138 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-7 | 142 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-5 | 144 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.18E-5 | 148 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
FSHAAFSALN FSLFSLEIKQ QKPPISLFSL TPNTSSPLTS FPVNSLSRKS DGNFPAKFRI 60 LDLLKMASPE NTNWLIEYGL IDDIPVPDAN FSVPVTSFSW PVQNSNGSSI VGGEIDGPFG 120 DCDKESSCKK RGRSESCSAS SSKASREKLR RDRLNDKFVE LGSILEPGRP PKTDKAAILI 180 DA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G120800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097393 | 4e-44 | BT097393.1 Soybean clone JCVI-FLGm-21P18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595307.1 | 5e-69 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 2e-33 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2C9W6S2 | 1e-127 | A0A2C9W6S2_MANES; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_015179m | 2e-68 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G120800.1.p |