PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G119700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 453aa    MW: 50078.1 Da    PI: 6.7074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G119700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-063433811154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Manes.03G119700.2.p 343 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 381
                          5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.589332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.22E-7342385No hitNo description
SuperFamilySSF474591.27E-11342399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049343387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-9346389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MADEFNTATN WWDSSRNRFD SGSSSSSSGL NSLGSFAWPS EVVDVKGRPS IESSSVSDSS  60
VVFHDTQKLQ QGHDSGADLH MMGLGLSSQA MDWNQALFRG DKGESSFRSM LQENLNSSTS  120
YHQHETGIGS SQVQWRERMF SGASGDPSMN HEFKQINRGF SLDQPQFSPH GSSSDSTVTC  180
QGLQSSGFQM DSTAIYGSTS TMFQGLLGSD NQQQQQQQCS FENRSMSYPY GANYGITSNE  240
LVPSWSNKVP QFLRNSPPKQ SPHSQLHFSN NAPFWNASAN SMNDVRPSFF PIQQQFPATN  300
FEEKPKNISE VRDSSTTLKK GASEPATKRP RNETPSPMPA FKVRKEKMGD RITALQQLVS  360
PFGKTDTASV LSEAIEYIKF LHEQVTVLST PYMKSGAPMH HQQSDKSNKD PEGQKQDLRS  420
RGLCLVPISS TFPVTHETTV DFWTPTFGGT FR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G119700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608499.10.0transcription factor bHLH123-like isoform X2
SwissprotQ8GXT37e-98BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A2C9W8850.0A0A2C9W885_MANES; Uncharacterized protein
STRINGcassava4.1_022409m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.14e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]