PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G105000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 171aa MW: 19711.5 Da PI: 9.6542 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.2e-18 | 24 | 74 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +t++q++ Le++F ++++ e + eLA++lg++ +qV +W+qNrRa++k Manes.03G105000.1.p 24 GLTHDQVRLLERAFTTTKKLEPELKLELANQLGVPPKQVAIWYQNRRARWK 74 689***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 101.6 | 6.8e-33 | 21 | 112 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kr l+++qv+lLE+ F++++kLepe K ela++Lg+ p+qva+W+qnrRAR+kt+ lE d+++L+ ++++ ++++rLe+ev +Lr+el Manes.03G105000.1.p 21 NKRGLTHDQVRLLERAFTTTKKLEPELKLELANQLGVPPKQVAIWYQNRRARWKTQSLELDHRRLQVKLENALADKRRLEREVVQLRDEL 110 6999************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 +e Manes.03G105000.1.p 111 RE 112 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-16 | 15 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.354 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.4E-16 | 19 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 24 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 25 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.73E-13 | 25 | 77 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDFFHHAQSQ QKRRRPPKHS NKRGLTHDQV RLLERAFTTT KKLEPELKLE LANQLGVPPK 60 QVAIWYQNRR ARWKTQSLEL DHRRLQVKLE NALADKRRLE REVVQLRDEL REAQIMAFAF 120 SPEMVPSHPA PSPLPFHSCF EGGSLASLHE DVNGEVLQFD ELYACLIGSG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G105000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605989.1 | 1e-124 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A2C9W6A7 | 1e-122 | A0A2C9W6A7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024251m | 1e-123 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-33 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G105000.1.p |