PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 892aa MW: 102506 Da PI: 8.6714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.03G074400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.6	3.8e-27	94	203	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek 72 +fY+eYAk+vGF + +++s++s+ +g++++++fvC+++g+++e++++ +++ r +r+ ++t+Cka+++vk+++ Manes.03G074400.2.p 94 SFYKEYAKSVGFATIIKASRRSRISGKFIDAKFVCTRYGTKRESSTTemphpvidtvgatsipvkRKRGRINRSLSKTDCKACMHVKRRQ 183 5****************************************99999**********998888999**************9 PP FAR1 73 .dgkwevtkleleHnHelap 91 dg+w+v ++ +eHnHe++p Manes.03G074400.2.p 184 hDGRWVVRSFIKEHNHEIFP 203 9**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-25	94	203	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-31	322	415	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.2	602	638	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	613	640	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	7.3E-7	614	636	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MGIDLQQPSA EYHKQDCRPN ANADMGGSGS YNRNRAAVDC CNISGTDKER PTVSGRAFDG 60 THKTYAGDRI NLNAAKDLEP HDGMEFESKE EAFSFYKEYA KSVGFATIIK ASRRSRISGK 120 FIDAKFVCTR YGTKRESSTT EMPHPVIDTV GATSIPVKRK RGRINRSLSK TDCKACMHVK 180 RRQHDGRWVV RSFIKEHNHE IFPDQAYFFR GHRNLDLGNN NVDALHAIRA RTKKVYVSMS 240 RQSGGYKKQE NQKRSLTNMS GSKRHLALDE GDAQIMLEHF RYMQDENPNF FYAMDLNEEQ 300 CLRNVLWVDA KARLDYGYFG DVIFFDTTYL KSEYKLPFAP FFGVNHHFQC LLLGCALVAD 360 ETKSTYVWLM QAWLRAVGGV APKVILTDQD KSLEQAIAEV FPNSQHCFCL WHLLSKIPEK 420 LSYVIRQHEN FMSKLNKCIF KSWTDEQFEK RWWKMVENFN LRNDVWFQSL YEDRQKWMPL 480 HMRDKFLAGM STTQRSDSIS SFLDKHLQRK TSLKEFLEHY KTIIQEKFEE EAKADFETWH 540 KQPGLKSPSP FGKQMAMLYT HTIFKKFQVE VLGVVACHPR KEAEDGETKT FKVQDFEESQ 600 DFIVVWKGTS SYFSCSCRSF EFNGFLCRHV LIVMQMSGMH SIPSQYILKR WTKDAKSRET 660 IGEQSGKVES RVQRYNDLCR RAFKLGDEGS LSQESYCIAF SALEEALRKC ESVNNAIHNV 720 IEPNSTSPNR PQDYDRVNCA TGVSKTSSND GISRKKQVYS EPDVTSIGMH ESWQQLEQLN 780 SKAPNLDGYF GPQQIVQGML NSIASTRDGY YSKEHSMQRL GQLNTIAPIH EAHFVNQQRT 840 QGMGQLHCRS ETIPSCFNTQ DGLQEMDQSS IGPSQLHGMA SKNLQPKHLP R*

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MGIDLQQPSA EYHKQDCRPN ANADMGGSGS YNRNRAAVDC CNISGTDKER PTVSGRAFDG  60
THKTYAGDRI NLNAAKDLEP HDGMEFESKE EAFSFYKEYA KSVGFATIIK ASRRSRISGK  120
FIDAKFVCTR YGTKRESSTT EMPHPVIDTV GATSIPVKRK RGRINRSLSK TDCKACMHVK  180
RRQHDGRWVV RSFIKEHNHE IFPDQAYFFR GHRNLDLGNN NVDALHAIRA RTKKVYVSMS  240
RQSGGYKKQE NQKRSLTNMS GSKRHLALDE GDAQIMLEHF RYMQDENPNF FYAMDLNEEQ  300
CLRNVLWVDA KARLDYGYFG DVIFFDTTYL KSEYKLPFAP FFGVNHHFQC LLLGCALVAD  360
ETKSTYVWLM QAWLRAVGGV APKVILTDQD KSLEQAIAEV FPNSQHCFCL WHLLSKIPEK  420
LSYVIRQHEN FMSKLNKCIF KSWTDEQFEK RWWKMVENFN LRNDVWFQSL YEDRQKWMPL  480
HMRDKFLAGM STTQRSDSIS SFLDKHLQRK TSLKEFLEHY KTIIQEKFEE EAKADFETWH  540
KQPGLKSPSP FGKQMAMLYT HTIFKKFQVE VLGVVACHPR KEAEDGETKT FKVQDFEESQ  600
DFIVVWKGTS SYFSCSCRSF EFNGFLCRHV LIVMQMSGMH SIPSQYILKR WTKDAKSRET  660
IGEQSGKVES RVQRYNDLCR RAFKLGDEGS LSQESYCIAF SALEEALRKC ESVNNAIHNV  720
IEPNSTSPNR PQDYDRVNCA TGVSKTSSND GISRKKQVYS EPDVTSIGMH ESWQQLEQLN  780
SKAPNLDGYF GPQQIVQGML NSIASTRDGY YSKEHSMQRL GQLNTIAPIH EAHFVNQQRT  840
QGMGQLHCRS ETIPSCFNTQ DGLQEMDQSS IGPSQLHGMA SKNLQPKHLP R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.03G074400.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021608327.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X5
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2C9W5E7	0.0	A0A2C9W5E7_MANES; Uncharacterized protein
STRING	POPTR_0003s10970.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.03G074400.2.p

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]