PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G059200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 853aa MW: 93832.8 Da PI: 5.592 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.4e-19 | 33 | 91 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Manes.03G059200.1.p 33 KYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 91 5679*****************************************************97 PP | |||||||
2 | START | 183.5 | 1.1e-57 | 178 | 386 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g+++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+++s+g g Manes.03G059200.1.p 178 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSFGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNALSTGngG 266 7899******************************************************.8888888888********************* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ ++++vRae+lpSg+li+p+++g+s +++v+h+dl+ + Manes.03G059200.1.p 267 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLSNTQNGPSvppTQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 356 *************************************************9999************************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lr+l++s++ ++kt++a+l+++++ Manes.03G059200.1.p 357 SVPEVLRPLYESSTLLAQKTTMAALRHLRQ 386 *************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.694 | 28 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-15 | 30 | 96 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-17 | 32 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.76E-16 | 33 | 93 | No hit | No description |
Pfam | PF00046 | 1.7E-16 | 34 | 91 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-18 | 35 | 91 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.17E-6 | 85 | 124 | No hit | No description |
PROSITE profile | PS50848 | 26.637 | 168 | 396 | IPR002913 | START domain |
CDD | cd08875 | 4.30E-82 | 172 | 387 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 5.8E-24 | 177 | 383 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.17E-38 | 177 | 389 | No hit | No description |
SMART | SM00234 | 1.7E-46 | 177 | 387 | IPR002913 | START domain |
Pfam | PF01852 | 3.2E-55 | 178 | 386 | IPR002913 | START domain |
Pfam | PF08670 | 2.3E-51 | 711 | 851 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MMMMEKCYDA EVMMAVTSTC KDGGSKIAMD NGKYVRYTPE QVEALERLYY ECPKPSSMRR 60 QQLIRECPIL SNIEPKQIKV WFQNRRCREK QRKEASRLQA VNRKLTAMNK LLMEENDRLQ 120 KQVSQLVYEN SYFRQQTQNA TDLATTDTSC ESVVISGQLH LTPQNQPRDA SPAGLLSIAE 180 ETLAEFLSKA TGTAVEWVQM PGMKPGPDSF GIVAISHGCP GVAARACGLV GLEPTRVAEI 240 LKDRPSWFRD CRAVDVLNAL STGNGGTIEL LYMQLYAPTT LAPARDFWLL RYTSVLEDGS 300 LVVCERSLSN TQNGPSVPPT QNFVRAEMLP SGYLIRPCEG GGSIIHIVDH MDLEPWSVPE 360 VLRPLYESST LLAQKTTMAA LRHLRQISQE VSQPNVSGWG RRPAALRALS QRLSKGFNEA 420 VNGFTDEGWS MLESDGIDDV TVLVNSSPGK ILGLNISYAS GFPSMSNGVL CAKASMLLQN 480 VPPAILLRFL REHRSEWADS GIDAYAAAAV KAGPCTLPVP RVGNFGGQVI LPLAHTIEHE 540 EFMEVIKLEN MGYREDMIMP GDIFLLQFCT GVDENAVGTC AELIFAPIDA SFSDDAPIIP 600 SGFRIIPLDS RMDASSPNRT LDLASALDVG PTGNKASGDV SGHCGSTKSV MTIAFQFAFE 660 LHLQENVASM ARQYVRSVVA SVQRVALALS PSRFGPQAGF RPPPGTPEAL TLARWICQSY 720 RCYLGMELLK SEGSESILKS LWHHSDAIMC CSLKALPVFT FANQGGLDML ETTLVALQDI 780 TLEKIFDDNG RKTLCSEFPQ IMQQGFMCLQ GGICLSSMGR PVSYERAVAW KVLNEEETAH 840 CICFMFINWT FV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G059200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021608402.1 | 0.0 | homeobox-leucine zipper protein ATHB-8-like isoform X1 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A2C9W4W1 | 0.0 | A0A2C9W4W1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_001600m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G059200.1.p |