PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G058500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 270aa    MW: 29083.1 Da    PI: 4.5524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G058500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1871121155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Manes.03G058500.1.p  71 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 121
                          68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1371121IPR001471AP2/ERF domain
SMARTSM003802.0E-3572135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3172130IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2172130IPR016177DNA-binding domain
PROSITE profilePS5103223.20972129IPR001471AP2/ERF domain
PRINTSPR003672.9E-107384IPR001471AP2/ERF domain
CDDcd000181.78E-3173131No hitNo description
PRINTSPR003672.9E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTEQAQNSET ESCSNSSSSS SSPPSPSPSS PGSAANSNSV PSKTQQEPVS VQEPNSPTKK  60
IKRLRDSNKH PVYRGVRMRN WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALSIK  120
GNSTILNFPE LANYLPRPAS LAPRDVQAAA AKAAQMDNFD KKFESKTTSS LCSSSATSLS  180
SLVSAMDLST GSGSEEELSE IVELPSLGTS YDSSELMSDF LLDDSVEEWV YPPPWLQFTE  240
DNYSGGCVFD EPTAAAGEGF GQGLLWECN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18701331276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G058500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606235.10.0dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD39e-76DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2C9W6D80.0A0A2C9W6D8_MANES; Uncharacterized protein
STRINGcassava4.1_013886m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]