PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.03G052300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Nin-like

Protein Properties

Length: 281aa MW: 31795.7 Da PI: 5.6294

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.03G052300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.2	1.1e-25	188	238	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d ++yF+lpi++AAk +++c+Tv+K+iCR+yG+ RWPhRkiks+ Manes.03G052300.1.p 188 TGRLTLKDFEAYFHLPIEEAAKIMNLCPTVVKKICRRYGMTRWPHRKIKSI 238 5689*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.03	178	259	IPR003035	RWP-RK domain
Pfam	PF02042	5.0E-22	191	238	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MADPRYVVPY HDPHDSPINY EILNFLRDAN PTLENLPSTD EPTSLHVSSD DIVNPNLSLE 60 DPMIWDIVNQ PNSGGQSQGE GPSLNRERRA TENLEQRYLD DGKPISVWPP PAMPFQCTCC 120 QVLREIIHTD GNCTTKLEIH GRLGIICHAV LEIKDQVMYE AQQADQTEGG NEAERGSRST 180 LAQQRERTGR LTLKDFEAYF HLPIEEAAKI MNLCPTVVKK ICRRYGMTRW PHRKIKSIQR 240 QISNLRANSN WNDPGERARA QAEIQRLEVE ISNICSGVTN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.03G052300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606976.1	0.0	uncharacterized protein LOC110611141
TrEMBL	A0A2C9W4Q1	0.0	A0A2C9W4Q1_MANES; Uncharacterized protein
STRING	cassava4.1_024231m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Manes.03G052300.1.p