PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G051300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 169aa    MW: 19500.6 Da    PI: 5.1458
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G051300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.5e-30107165159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYG+K+vk+s++pr+YYrC  +gCpvkk+ver++e++++v++tYeg Hnh+
  Manes.03G051300.1.p 107 LDDGFKWRKYGKKMVKNSPNPRNYYRCWVEGCPVKKRVERDREEQEYVITTYEGVHNHP 165
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3293166IPR003657WRKY domain
SuperFamilySSF1182901.96E-27100166IPR003657WRKY domain
PROSITE profilePS5081129.471102167IPR003657WRKY domain
SMARTSM007741.2E-33107166IPR003657WRKY domain
PfamPF031067.4E-24108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MISLHWKENY TTDHIGYCDM SHSDDLSSFE LSEFLKFDEW IEEDDQLSVF PAANSSQTPV  60
YRAHVIGESG VAASSHEGPS IAIEEGREMK EVKERVAFKT KSEVEILDDG FKWRKYGKKM  120
VKNSPNPRNY YRCWVEGCPV KKRVERDREE QEYVITTYEG VHNHPTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2397164774Probable WRKY transcription factor 4
2lex_A1e-2397164774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G051300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275970.0KT827597.1 Manihot esculenta WRKY transcription factor 22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606536.11e-124probable WRKY transcription factor 50 isoform X1
SwissprotQ8VWQ51e-42WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A2C9W4P11e-123A0A2C9W4P1_MANES; Uncharacterized protein
STRINGcassava4.1_032004m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-45WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]